Deciphering Batch Effects in Single-cell Transcriptomics with Concept Bottlenecks

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• Hanchen Wang, Stanford CS and Genentech gRED
• Wednesday 28 June 2023, 11:00-12:30
• Cambridge University Engineering Department, CBL Seminar room BE4-38..

If you have a question about this talk, please contact Isaac Reid.

Zoom link available upon request (it is sent out on our mailing list, eng-mlg-rcc [at] lists.cam.ac.uk). Sign up to our mailing list for easier reminders via lists.cam.ac.uk.

In this presentation, I’ll demystify the intersection of AI/ML + Genomics, examining data types, problems, and applications. I’ll share my views on potential future directions and discuss my recent PhD work on building foundation models for science.

The highlight is our proposed model, GeneCBM, designed to account for the origins and outcomes of unwanted variance in genomics data. This model incorporates three key features: metadata prediction, data generation, and atlas integration.

This talk is part of the Machine Learning Reading Group @ CUED series.

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