First-passage time to clear the way for receptor-ligand binding in a crowded environment

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• Jay Newby ()
• Tuesday 05 April 2016, 11:45-12:30
• Seminar Room 1, Newton Institute.

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SDBW03 - Advances in numerical and analytic approaches for the study of non-spatial stochastic dynamical systems in molecular biology

I will present theoretical support for a hypothesis about cell-cell contact, which plays a critical role in immune function. A fundamental question for all cell-cell interfaces is how receptors and ligands come into contact, despite being separated by large molecules, the extracellular fluid, and other structures in the glycocalyx. The cell membrane is a crowded domain filled with large glycoproteins that impair interactions between smaller pairs of molecules, such as the T cell receptor and its ligand, which is a key step in immunological information processing and decision-making. A first passage time problem allows us to gauge whether a reaction zone can be cleared of large molecules through passive diffusion on biologically relevant timescales. I combine numerical and asymptotic approaches to obtain a complete picture of the first passage time, which shows that passive diffusion alone would take far too long to account for experimentally observed cell-cell contact format ion times. The result suggests that cell-cell contact formation may involve previously unknown active mechanical processes.

This talk is part of the Isaac Newton Institute Seminar Series series.

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