Deep learning analysis of wound healing in flies

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• Jake Turley (University of Bristol)
• Tuesday 05 December 2023, 15:00-16:00
• Seminar Room 2, Newton Institute.

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SPL - New statistical physics in living matter: non equilibrium states under adaptive control

Wound healing is a highly conserved process required for survival after tissue damage. In mammals, the three cell-behaviours that contribute to wound re-epithelialisation are cell shape deformation, cell division, and cell migration. This study aims to quantify the contributions of each of these cell behaviours using wounded Drosophila pupae. Live confocal time-lapse microscopy allows us to follow cell behaviours in the pupal wing before and after wounding. We have developed deep learning algorithms to identify dividing cells with 97% accuracy and determine the orientation of these divisions relative to the wound margin, alongside additional machine learning tools that measure other cell behaviours. We want to know whether these properties are synchronized/aligned by the chemical and mechanical signals of wounding. We are also investigating how far back from the wound edge these changes in cell behaviour occur, and whether this depends on wound size. We have characterised the spatial-temporal distribution of divisions and found a reduction in their density close to the wound edge, but 2hr after wounding there is a synchronised burst of divisions further back. Next, we will genetically modify wound signals to observe how they impact wound healing. We can not only quantify changes to the rate of wound closure but also the difference in cell behaviours. Having a greater understanding of the mechanics of wound healing will hopefully be a first step in developing future treatments for the clinic.

This talk is part of the Isaac Newton Institute Seminar Series series.

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